[1] | Aardema, M. and MacGregor, J. (2002). Toxicology and genetic toxicology in the new era of ‘‘toxicogenomics’’: impact of ‘‘-omics’’ technologies. Mut. Res. 499: 13-25. |
|
[2] | Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K. and Walter, P. (2008). Molecular biology of the cell garland. Science. 64: 69-114. |
|
[3] | Beja, O., Aravind, l., Koonin, E. V., Suzuki, M. T., Hadd, A., Nguyen, l. P. and Jovanovich, S. B. (2000). Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science. 289: 1902-1906. |
|
[4] | Chandonia, J. M. and Brenner, S. E. (2006). "The impact of structural genomics: expectations and outcomes". Science. 311 (5759): 347-351. |
|
[5] | Colin, S., Deniaud, E., Jam, M., Descamps, V., Chevolot, Y., Kervarec, N., Yvin, J. C., Barbeyron, T., Michel, G. and Kloareg, B. (2006). Cloning and biochemical characterization of the fucanase FcnA: definition of a novel glycoside hydrolase family specific for sulfated fucans. Glycobiology. 16: 1021-1032. |
|
[6] | Davidson, E. H. (2010). Emerging properties of animal gene regulatory networks. Nature. 468: 911-920. |
|
[7] | Davis, R. H. (2004). The age of model organisms. Nat. Rev. Genet. 5: 69-76. |
|
[8] | DeLong, E. F., Preston, C. M., Mincer, T., Rich, V., Hallam, S. J., Frigaard, N-U., Martinez, A., Sullivan, M. B., Edwards, R., Brito, B. R., Chisholm, S. W. and Karl, D. M. (2006). Community genomics among stratified microbial assemblages in the ocean’s interior. Science. 311: 496-503. |
|
[9] | F. A. O. (2006). State of World Aquaculture: FAO Fisheries Department. Rome. 24pp. |
|
[10] | Farr, S. and Dunn, R. T. (1999). Gene expression applied to toxicology. Toxicol. Sci. 50: 1-9. |
|
[11] | Flament, D., Barbeyron, T., Jam, M., Potin, P., Czjzek, M., Kloareg, B. and Michel, G. (2007). Alpha-agarases define a new family of glycoside hydrolases, distinct from beta-agarase families. Appl. Environ. Microbiol. 73: 4691-4694. |
|
[12] | Frias-Lopez, J., Shi, Y., Tyson, G. W., Coleman, M. L. and Schuster, S. C. (2008). Microbial community gene expression in ocean surface waters. Proc. Natl. Acad. Sci. 105: 3805-3810. |
|
[13] | Gibson, G. and Muse, S. V. (2007). A primer of genome science (3rd Ed.). Sunderland, MA: Sinauer Associates, 122pp. |
|
[14] | Gilbert, J. A., Field, D., Huang, Y., Edwards, R., Li, W., Gilna, P. and Joint, I. (2008). Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS ONE. 3(8): 3042. |
|
[15] | Glöckner, F. O., Kube, M., Bauer, M., Teeling, H., Lombardot, T. and Ludwig, W. (2003). Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc. Natl. Acad. Sci. 100: 8298-8303. |
|
[16] | Gracey, A. Y. and Cossins, A. R. (2003). Application of microarray technology in environmental and comparative physiology. Annu. Rev. Physiol. 65: 231-258. |
|
[17] | Gupta, P. K. (2008). Single-molecule DNA sequencing technologies for future genomics research. Trends Biotechnol. 26: 602-611. |
|
[18] | Hall, N. (2007). Advanced sequencing technologies and their wider impact in microbiology. J. Exp. Biol. 210: 1518-1525. |
|
[19] | Hollywood, K., Brison, D. R. and Goodacre, R. (2006). Metabolomics: current technologies and future trends. Proteomics 6: 4716-4723. |
|
[20] | Johnson, D. E. and Wolfgang, H. I. (2000). Predicting human safety: screening and computational approaches. Drug Discov. Today. 5: 445-454. |
|
[21] | Joshua, L. and Alexa, T. Mc. (2001). "'Ome Sweet 'Omics--A genealogical treasury of words". The Scientist. 15: p7. |
|
[22] | Joyce, A. R. and Palsson, B. Ø. (2006). The model organism as a system integrating ‘omics’ data sets. Nature Rev. Mol. Cell. Biol. 7: 98-210. |
|
[23] | Kasper, P., Oliver, G., Silva-Lima, B., Singer, T. and Tweats, D. (2005). Joint EFPIA/CHMP SWP workshop: the emerging use of omic technologies for regulatory non-clinical safety testing. Pharmacogenomics. 6: 181-184. |
|
[24] | Leu, J. H., Chang, C. C., Wu, J. L., Hsu, C. W., Hirono, I., Aoki, T., Juan, H. F., Lo, C. F., Kou, G. H. and Huang, H. C. (2007). Comparative analysis of differentially expressed genes in normal and white spot syndrome virus infected penaeus monodon. BMC Genomics. 8: 120-133. |
|
[25] | Leu, J. H., Chen, S. H., Wang, Y. B., Chen, Y. C., Su, S. Y., Lin, C. Y., Ho, J. M. and Lo, C. F. (2010). A review of the major penaeid shrimp EST studies and the construction of a shrimp transcriptome database based on the ESTs from four penaeid shrimp. 65pp. |
|
[26] | Lighner, D. V. and Redman, R. M. (1998): Shrimp disease and current diagnostic methods. Aquaculture. 164: 201-220. |
|
[27] | Lord, P. G. (2004). Progress in applying genomics in drug development. Toxicol. Lett. 149: 371-375. |
|
[28] | Lucien-Brun, H. (1997). Evolution of world shrimp production. Fisheries and Aquaculture. World Aquaculture. 28: 21-33. |
|
[29] | MacGregor, J. T. (2003). The future of regulatory toxicology: impact of the biotechnology revolution. Mutat. Res. 75: 236-248. |
|
[30] | MacGregor, J. T., Farr, S., Tucker, J. D., Heddle, J. A., Tice, R. R. and Turteltaub, K. W. (1995). New molecular endpoints and methods for routine toxicity testing. Fundam. Appl. Toxicol. 26: 156-173. |
|
[31] | Margulies, M., Egholm, M., Altman, W. E. and Attiya, S. (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature. 437: 376-380. |
|
[32] | Markert, S., Arndt, C. and Felbeck, H. (2007). Physiological proteomics of the uncultured endosymbiont of Riftia pachyptila. Science. 315: 247-250. |
|
[33] | McKusick VA, Ruddle FH (1987) A new discipline, a new name, a new journal. Genomics. 1: 1-2. |
|
[34] | Metzker, M. L. (2010). Sequencing technologies-the next generation. Nat. Rev. Genet. 11: 31-46. |
|
[35] | Meyer, F. (2006). Genome Sequencing vs. Moore's Law: Cyber challenges for the next decade. CTWatch Quarterly. 2: 14-17. |
|
[36] | Michel, G., Helbert, W., Kahn, R., Dideberg, O. and Kloareg, B. (2003). The structural bases of the processive degradation of iota-carrageenan, a main cell wall polysaccharide of red algae. J. Mol. Biol. 334: 421-433. |
|
[37] | N. A. S. (2007). The new science of metagenomics: revealing the secrets of our microbial planet. ISBN: 0-309-10677-X 170pp. |
|
[38] | Nuwaysir, E. F., Bittner, M., Trent, J., Barrett, J. C. and Afshari, C. A. (1999). Microarrays and toxicology: the advent of toxicogenomics. Mol. Carcinogenesis. 24: 153-159. |
|
[39] | Peterson, R. L., Casciotti, L., Block, L., Goad, M. E., Tong, Z., Meehan, J. T., Jordan, R. A., Vinlove, M. P., Markiewicz, V. R., Weed, C. A. and Dorner, A. J. (2004). Mechanistic toxicogenomic analysis of WAY-144122 administration in Sprague-Dawley rats. Toxicol. Appl. Pharmacol. 196: 80-94. |
|
[40] | Petricoin, E. F., Hackett, J. L., Lesko, L. J., Puri, R. K., Gutman, S. I., Chumakov, K., Woodcock, J., Feigal, D. W., Zoon, K. C. and Sistare, F. D. (2002). Medical applications of microarray technologies: a regulatory science perspective. Nat. Genet., 32: 474-479. |
|
[41] | Pevsner, J. (2009). Bioinformatics and functional genomics (2nd Ed.). Hoboken, NJ, 7: Wiley-Blackwell, 15pp. |
|
[42] | Rappé, M. S., Connon, S. A., Vergin, K. L. and Giovannoni, S. J. (2002). Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature. 418: 630-633. |
|
[43] | Ray, G. C. (1988). Ecological diversity in coastal zones and oceans. In E. O. Wilson, ed. Biodiversity. Washington, D.C.: National Academy Press, 36-50. |
|
[44] | Rodi, C. P., Bunch, R. T., Curtiss, S. W., Kier, L. D., Cabonce, M. A., Davila, J. C., Mitchell, M. D., Alden, C. L. and Morris, D. L. (1990). Revolution through genomics in investigative and discovery toxicology. Toxicol. Pathol. 27: 107-110. |
|
[45] | Rogers, Y. H. and Venter, J. C. (2005). Genomics: massively parallel sequencing. Nature. 437: 326-327. |
|
[46] | Schena, M., Heller, R. A. Theriault, T. P., Konrad, K., Lachenmeier, E., and Davis, R. W. (1998). Microarrays: biotechnology’s discovery platform for functional genomics. Trends Biotechnol. 16: 301-306. |
|
[47] | Schweder, T., Markert, S. and Hecker, M. (2008). Proteomics of marine bacteria. Electrophoresis. 29: 2603-2616. |
|
[48] | Shendure, J., and Ji, H. (2008). Next-generation DNA sequencing. Nat. Biotechnol. 26: 1135-1145. |
|
[49] | Sogin, M. L., Morrison, H. G., Huber, J. A., Welch, D. M., Huse, S. M., Neal, P. R., Arrieta, J. M. and Herndl, G. J. (2006). Microbial diversity in the deep sea and the underexplored ‘rare biosphere’. Proc. Natl. Acad. Sci. USA 103: 12115-12120. |
|
[50] | Supungul, P., Klinbunga, S., Pichyangkura, R., Jitrapakdee, S., Hirono, I., Aoki, T. and Tassanakajon, A. (2002): Identification of immune-related genes in hemocytes of black tiger shrimp (Penaeus monodon). Mar Biotechnol. 4: 487-494. |
|
[51] | Szalay, A., and Gray, J. (2006). 2020 Computing: Science in an exponential world. Nature. 440: 413-414. |
|
[52] | Ten Bosch, J. R. and Grody, W. W. (2008). Keeping up with the next generation: massively parallel sequencing in clinical diagnostics. J. Mol. Diagn. 10: 484-492. |
|
[53] | Thomas, M.A. and Klaper, R. (2004). Genomics for the ecological toolbox. Trends Ecol. Evol. 19: 439-445. |
|
[54] | Ulrich, R. and Friend, S. H. (2002). Toxicogenomics and drug discovery: will new technologies help us produce better drugs? Nat. Rev. Drug Discov. 1: 84-88. |
|
[55] | Van Straalen, N. M. and Roelofs, D. (2006). An introduction to ecological genomics. Oxford University Press, Oxford. Pp85. |
|
[56] | Venter, J. C., K. Remington, J. F. Heidelberg, A. L. Halpern, D. Rusch, J. A. Eisen, D. W. U. (2004). Environmental genome shotgun sequencing of the Sargasso Sea”. Science. 304: 66-74. |
|
[57] | Wilkening, J., Wilke, A. N. D. and Folker, M. (2009). Using Clouds for Metagenomics: A Case Study. In: Proceedings IEEE Clouds. 12-19. |
|
[58] | Worm,W., Barbier, E. B. and Beaumont, N. (2006). Impacts of biodiversity loss on ocean ecosystem services. Science 314: 787-790. |
|
[59] | Yooseph, S., Sutton, G., Rusch, D. B., Halpern, A. L., Williamson, S. J. and Remington, K. (2007). The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS. Biol. 5: 16pp. |
|
[60] | Zengler, K., Toledo, G., Rappé, M. S., Mathur, E. J., Short, J. M. and Keller, M. (2002). Cultivating the uncultured. Proc. Natl. Acad. Sci. U. S. A. 99: 15681-15686. |
|