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Qualitative and Quantitative Analyses of Synthesized Short-Chain Fatty Acid Phenyl Esters Using Fourier-Transform Infrared Spectroscopy

Ronald P. D’Amelia*, Masashi W. Kimura, Marie-Claire Villon

Chemistry Department, Hofstra University, Hempstead, NY

Abstract: Fourier-transform infrared spectroscopy (FT-IR) is a widely used technique to qualitatively determine the molecular structure of organic compounds; however, using quantitative FT-IR (qFT-IR) for the compositional analyses of mixtures is less common. To reinforce instrumental use in undergraduate laboratories, we have devised a multipart experiment that not only combines the qualitative and quantitative aspects of FT-IR but also exposes students to computational and synthetic organic chemistry. The objectives of this experiment are to synthesize a series of phenyl esters (PhEs) of various molecular weights; use qualitative FT-IR to characterize and compare the synthesized products with standards, databases, and with theoretical spectra computed using the cost-efficient B97-3c functional; and determine the weight percent (wt. %) composition of a binary mixture. We report on the methodologies used to synthesize and purify four PhEs; characterize them using FT-IR, conduct theoretical calculations and compare their FT-IR spectra with experimental ones; and determine the wt. % composition of phenyl acetate (PhAc), phenyl propionate (PhPr), phenyl butyrate (PhBu), and phenyl hexanoate (PhHex) in binary mixtures ranging from 0% to 100%. The results show a strong, linear correlation of gravimetrically calculated wt. % composition of a selected compound in a binary mixture using qFT-IR. This experiment demonstrates the applicability of qFT-IR as an educational tool for the undergraduate chemical laboratory and combines four different branches of chemistry: computational, instrumental, organic, and analytical.

Keywords: ab initio, computational chemistry, density functional theory, esterification, Fourier-transform infrared spectroscopy, hands-on learning, phenyl esters, phenyl ester mixtures, quantitative analysis, synthetic organic chemistry, undergraduate laboratory experimente

Received May 22, 2021; Revised June 28, 2021; Accepted July 08, 2021

Citation: Ronald P. D’Amelia, Masashi W. Kimura, Marie-Claire Villon, Qualitative and Quantitative Analyses of Synthesized Short-Chain Fatty Acid Phenyl Esters Using Fourier-Transform Infrared Spectroscopy. World Journal of Organic Chemistry, 9 (1). 6-17. January 2021. doi:10.12691/wjoc-9-1-2

1. Introduction

Infrared (IR) spectroscopy is a common technique routinely taught in many undergraduate chemistry courses, and regularly used for both qualitative and quantitative analyses [1,2,3,4,5,6,7,8,9]. With the increase in signal-to-noise ratio, Fourier-transform infrared spectroscopy (FT-IR) has become one of the most essential instruments to determine chemical structure and composition. The latter often refers to quantitative FT-IR (qFT-IR), where its utilization has been well documented for the compositional analyses of different fatty acids [10,11,12,13,14,15,16,17,18]. Since we have previously used qFT-IR for the compositional analyses of various copolymers and blends and sought to increase exposure to FT-IR techniques in the undergraduate laboratories, we have developed an experiment that uses instrumental, synthetic, and computational techniques [19,20].

FT-IR exploits the quantized nature of photonic absorption in molecules, where different functional groups absorb IR light at certain frequencies, resulting in either stretching or bending movements specific to those groups [21,22]. These vibrations are also associated with changes in electric dipole moments. Symmetrical molecules, such as homonuclear diatomic gases, often yield no changes in dipole moments when they absorb infrared light, and, therefore, are unobservable on an FT-IR spectrum. An FT-IR spectrum generally plots transmission (or absorption) versus frequency, where each peak is characteristic to a specific functional group. The intensities of these peaks are also proportional to the concentration of the molecule according to Beer’s Law.

Using ab initio methods to simulate FT-IR spectra is achievable; in fact, it has become a common practice to compare theoretical spectra with their experimental counterparts [23,24,25,26,27,28]. Unfortunately, the main downsides of using these methods are computational costs along with accuracy. Many ab initio methods, including density functional theory (DFT), are computationally expensive, and theoretical spectra often need scaling factors to accurately replicate their experimental counterparts [29,30,31]. Nevertheless, modern theoretical methods are constantly evolving, and the development of neural networks may lead to accurate and real-time results, which would be ideal for both industrial and academic applications [32,33,34].

Figure 1. Reaction Scheme of PhE and its Carboxylic Acid Byproduct from PhOH and an Acid Anhydride

There are multiple objectives to our experiment. The first is to synthesize four different phenyl esters (PhEs) of various molecular weights. These include phenyl acetate (PhAc), phenyl propionate (PhPr), phenyl butyrate (PhBu), and phenyl hexanoate (PhHex). These PhEs were synthesized via esterification of phenol (PhOH) and their corresponding acid anhydrides. The second is to characterize each PhE by comparing their FT-IR spectra to standards, spectral databases, and computational simulations. The third is to prepare a series of binary mixtures containing two different PhEs ranging from 20% to 80% by volume. Pure PhEs shall represent either 0% or 100%. The weight percent (wt. %) composition of each binary mixture was also determined gravimetrically. The fourth is to construct calibration curves of each binary mixture by plotting the average FT-IR integration of a peak, or over a frequency range, versus the gravimetrically determined wt. % composition of a PhE. Lastly, the fifth is to determine the wt. % composition of an unknown binary mixture.

1.1. Learning Objectives

1. To understand the overall principles of FT-IR.

2. To learn how to synthesize various PhEs via esterification of PhOH and their corresponding acid anhydrides, and properly prepare binary mixtures using volumetric and gravimetric techniques.

3. To characterize each PhE by determining the functional groups associated with each FT-IR peak, and compare them to standards, spectral databases, and computational simulations.

4. To establish correlation curves between the integrated FT-IR peak areas, or over a range of frequencies, and the gravimetric wt. % compositions for each binary mixture.

2. Materials and Methods

2.1. Student Procedure

Each student shall be assigned a PhE to synthesize using PhOH and its corresponding acid anhydride. They would then proceed to purify them by neutralizing the acid byproduct. Figure 1 provides a general reaction scheme of a PhE. They will then characterize their pure product using FT-IR and compare them to standards, spectral databases, or computational simulations. The instructor or students shall perform DFT computations to generate the theoretical FT-IR spectra of each PhE. The instructor will assign each student to prepare binary mixtures of approximately 20%, 40%, 60%, and 80% by volume. Sample vials (7-mL) will be weighed before and after the addition of a PhE, and this will be repeated for the second PhE. All recorded weights will be used to compute the wt. % composition of each component. Students will run FT-IR on their samples, where they will construct calibration curves of the average FT-IR integrations and the gravimetric wt. % composition of a component. Afterward, the students will receive an unknown sample prepared by the instructor, where they must determine the wt. % composition of a selected component.

2.2. Experimental Materials

Phenol (≥ 99.0% pure), acetic anhydride (99% pure), propionic anhydride (99% pure), butyric anhydride (98% pure), hexanoic anhydride (97% pure), sodium bicarbonate (≥ 99.5% pure), and phenyl propionate (99% pure) were supplied by Sigma-Aldrich™. Anhydrous sodium sulfate (≥ 99.0% pure) was supplied by Macron Fine Chemicals™.

2.2.1. Synthesis of PhEs

Approximately 10 grams of PhOH was weighed into a 100-mL three-neck, round-bottom flask fitted with a condenser, thermometer, and a 100-mL addition funnel. Approximately 15-mL of an acid anhydride (acetic, propionic, butyric, or hexanoic) was added to the round-bottom flask. The acid anhydride was added slowly with stirring, and the solution was refluxed for around three hours at different temperatures depending on the anhydride (125°C for acetic, 140 °C for propionic, 150°C for butyric, and 250°C for hexanoic). After reflux, approximately 25-mL of distilled water was added to neutralize the excess anhydride. This solution was poured into a 250-mL separatory funnel, which was capped and inverted several times. The aqueous layer was removed and neutralized with sodium bicarbonate, while the PhE was transferred to a 250-mL round-bottom flask. Approximately 100-mL of a saturated sodium bicarbonate solution was slowly added with stirring, and the solution was left alone for around an hour. Afterward, the solution was poured into a 250-mL separatory funnel, where the aqueous layer was removed, while the PhE was transferred to a labeled 20-mL scintillation vial. Some anhydrous sodium sulfate was added to the vial, and after a day, the PhE was transferred to a new, labeled, and pre-weighed 20-mL scintillation vial, which was then weighed and analyzed using FT-IR.

2.2.2. Preparation of Binary PhE Mixtures

Twelve, 200-μL mixtures of PhEs were made as shown in Table 1. All 7-mL vials were labeled based on the volumetric ratio in the mixture and weighed before adding any PhE. Each PhE was added using a Gilson classic model P200 pipette. After each addition of a PhE into a vial, their masses were recorded using an analytical balance with a 0.1-mg precision. These masses were used to calculated wt. % composition of a component in each binary mixture using equation 1:

[picture] | (1)

where and are the gravimetrically determined masses of each component in a mixture.

For the unknowns, a 50:50 mixture of PhAc-PhPr, PhAc-PhBu, and PhAc-PhHex was prepared by the instructor as shown in Table 2.

2.2.3. Fourier-Transform Infrared Spectroscopy (FT-IR)

All PhE samples were analyzed using a Brucker Alpha-P FT-IR spectrometer with a Platinum® attenuated total internal reflectance quick snap module with a diamond crystal. The Alpha-P had a Michelson Interferometer with a SiC globar as the IR source, and the time dependence of the IR intensity was measured with a pyroelectric DTGS detector. The data analyses were done using the Brucker OPUS® software version 7.0.122. Background measurements were conducted with 48 scans and a resolution of 2 cm⁻¹. Approximately 20-μL of each sample was analyzed by simply pressing the droplet between the anvil and diamond crystal. Each measurement represents the average spectrum of the aforementioned number of scans and resolution used for the background measurement. For qFT-IR measurements, five scans were conducted for each sample and their peak integrations were obtained using the built-in integration feature.

Table 1. Summary of Aliquoted Binary Mixtures

Table 2. Summary of Aliquoted Unknown Binary Mixtures

2.2.4. Theoretical Methods

Each PhE was modeled using the Avogadro software package to initially optimize its geometry using the universal force field method and generate the necessary input files [35,36,37]. DFT calculations were conducted using the ORCA software package, version 4.2.1, and the cost-efficient B97-3c functional with the def2-mTZVP basis set [38,39]. Geometry optimization was first conducted, followed by an analytical frequency calculation. Both calculations were performed in the gas phase. The necessary theoretical FT-IR data were generated using the built-in “orca_mapspc” feature to convert an output file into data points with a specified wavenumber range of 4000-400 cm⁻¹. Theoretical FT-IR spectra were constructed by plotting transmission vs. wavenumber (cm⁻¹); data points from the experimentally obtained FT-IR spectra were also plotted for comparison.

2.2.5. Hazards

Students are required to wear gloves and safety glasses during the entirety of the experiment. Acid anhydrides are flammable, corrosive, and water-sensitive chemicals, which should be handled exclusively in a fume hood. Sodium bicarbonate is not classified as a hazardous material; however, it can cause slight skin and eye irritations upon contact. Anhydrous sodium sulfate is very hygroscopic, and it may cause eye, skin, and respiratory tract irritation upon contact.

2.2.6. Statistical Analysis

Each of the binary mixtures was analyzed multiple times. The data reported is the average of the normalized peak areas. The average percent relative standard deviation for the analyzed samples ranged from 0.34% to 2.26%. Propagation of error analyses was conducted for all calibration plots and for calculating the experimental wt. % composition of a component in a 50:50 mixture. All gravimetric wt. % compositions were within the 95% confidence interval (CI) of the experimental results for five measurements.

3. Results and Discussion

3.1. FT-IR Analysis of PhEs

All qualitative FT-IR analyses of the PhEs were conducted using transmission measurements. Figure 2 showcases the overlapping spectra of all PhEs. Table 3 summarizes the IR vibrations for all PhEs. Stretching and bending vibrations are represented by lowercases nu (ν) and delta (δ), respectively.

Figure 2. Overlapped FT-IR Spectra of PhEs

Table 3. Summary of FT-IR Data of PhEs Reported in Wavenumbers (cm⁻¹)

All PhEs have a weak aromatic νC-H peak at approximately 3044 cm⁻¹, two νC=C peaks at approximately 1593 cm⁻¹ and 1492 cm⁻¹, and multiple aromatic δC-H and δC=C peaks between 980-490 cm⁻¹, which are characteristic of the phenyl group. All PhEs also have a strong νC=O peak at approximately 1758 cm⁻¹, and multiple νC-O peaks between 1220-1000 cm⁻¹, which are characteristic of the ester group; and multiple aliphatic δC-H peaks between 1470-1250 cm⁻¹, which are characteristic of the methyl and methylene groups. PhPr, PhBu, and PhHex have additional νC-H peaks between 2990-2850 cm⁻¹ that increase in absorption intensity as more methylenes are added to the aliphatic tail.

Figure 3 is a correlation plot of the FT-IR frequencies from the synthesized PhPr and its standard that was purchased from Sigma-Aldrich™. Figure 4 compares experimentally obtained FT-IR frequencies to those reported in the Spectral Database for Organic Compounds (SDBS) for PhAc, PhPr, and PhBu [40]. The correlation plots in both Figure 3 and Figure 4 demonstrate that there are excellent agreements, as indicated by the correlation coefficients (R²) being 1.

Figure 3. Correlation Plot of the FT-IR Frequencies from the Synthesized PhPr and its Standard Purchased from Sigma-Aldrich™

Figure 4. Correlation Plots of FT-IR Frequencies Obtained Experimentally and from SDBS for PhAc (Blue, Top Left), PhPr (Orange, Top Right), and PhBu (Green, Bottom Middle)

3.2. Assessment of Theoretical FT-IR Calculations using B97-3c

Figure 5 shows the correlation plots of the experimentally obtained FT-IR frequencies versus those calculated using the B97-3c functional in the gas phase. In all cases, there are strong, linear agreements between the experimentally obtained and theoretically computed FT-IR frequencies. All cases have R² values greater than 0.999. Scaling factors could also be acquired from these plots, which could improve the accuracy of the computed frequencies [29,30,31]. Scaling factors can be applied using equation 2:

[picture] | (2)

where A is the slope and B is the y-intercept of a correlation plot specific to a PhE. Additionally, these scaling factors and their uncertainties could be averaged together and applied to all PhEs, which results in and These new scaling factors were applied to all computed B97-3c frequencies, which were plotted with their respective experimental FT-IR spectra in Figure 6 through 9 for comparison. Overall, the B97-3c functional offers an affordable and accurate prediction of IR frequencies to confirm the structure of each PhE.

Figure 5. Correlation Plots of FT-IR Frequencies Obtained Experimentally and from Theoretical Calculations using the B97-3c Functional for PhAc (Blue, Top Left), PhPr (Orange, Top Right), PhBu (Green, Bottom Left), and PhHex (Black, Bottom Right)

Figure 6. FT-IR Spectra of PhAc Experimental (Blue), Theoretical using B97-3c (Red), and B97-3c with Scaling Factors (Black)

Figure 7. FT-IR Spectra of PhPr Experimental (Blue), Theoretical using B97-3c (Red), and B97-3c with Scaling Factors (Black)

Figure 8. FT-IR Spectra of PhBu Experimental (Blue), Theoretical using B97-3c (Red), and B97-3c with Scaling Factors (Black)

Figure 9. FT-IR Spectra of PhHex Experimental (Blue), Theoretical using B97-3c (Red), and B97-3c with Scaling Factors (Black)

Figure 10. FT-IR Spectra of PhAc-PhPr Mixtures with Zoomed-in Area between 3200-2700 cm⁻¹

Figure 11. FT-IR Spectra of PhAc-PhBu Mixtures with Zoomed-in Area between 3200-2700 cm⁻¹

Figure 12. FT-IR Spectra of PhAc-PhHex Mixture with Zoomed-in Area between 3200-2700 cm⁻¹

Figure 13. Calibration Plots of Average Integrations between 3120-2760 cm-1 vs. Gravimetric wt. % PhAc in PhAc-PhPr (Blue, Top Left), PhAc-PhBu (Orange, Top Right), and PhAc-PhHex (Green, Bottom Middle) Mixtures

3.4. qFT-IR Analysis of PhE Mixtures

All qFT-IR analyses were conducted using absorbance measurements. Figure 10 through Figure 12 showcase the overlapped FT-IR spectra of each PhE mixture. Peak integrations of each binary mixture were measured between 3120-2760 cm⁻¹, which consists of the aromatic and aliphatic νC-H vibrations. Calibration plots of integrations vs. the gravimetric wt. % composition of PhAc were constructed. Figure 13 shows the calibration plots of the qFT-IR integrations vs. the gravimetric wt. % compositions of PhAc. All plots displayed a strong, linear correlation between the qFT-IR integration vs. the gravimetric wt. % composition of a component in each mixture. The R² values were greater than 0.99 in all cases.

Table 4. Summary of Experimental Wt. % PhAc of 50:50 Mixtures

The experimental wt. % PhAc of the 50:50 mixtures obtained via qFT-IR analyses and the calibration plots are shown in Table 4. Gravimetric wt. % PhAc in all binary mixtures were within the 95% CI of their experimentally determined counterparts for five measurements.

4. Conclusions

This multi-part experiment demonstrates the qualitative and quantitative uses of FT-IR in the undergraduate laboratory. All FT-IR spectra of the synthesized PhEs agreed with those of their standards, databases, and theoretical counterparts. The constructed calibration plots can be used to accurately determine the wt. % composition of a component in a binary mixture using different PhEs. There is a strong, linear correlation between the FT-IR peak integrations and the wt. % composition of a component determined gravimetrically. This experiment can either be expanded to include other PhE mixtures or adapted for different reagents. Furthermore, it serves as an excellent tool for the undergraduate chemistry laboratory, one that combines four major branches of chemistry: computational, instrumental, organic, and analytical.

Acknowledgments

Special thanks to Joseph Mancuso and Brandon Khanyan who reviewed this article. We also acknowledge the support from a Hofstra University HCLAS Faculty Research and Development Grant.

List of Abbreviations

CI – Confidence Interval

DFT – Density Functional Theory

FT-IR – Fourier-Transform Infrared Spectroscopy

IR – Infrared Spectroscopy

PhAc – Phenyl Acetate

PhBu – Phenyl Butyrate

PhEs – Phenyl Esters

PhHex – Phenyl Hexanoate

PhOH – Phenol

PhPr – Phenyl Propionate

qFT-IR – Quantitative FTIR

R² – Correlation Coefficient

Wt. % - Weight Percent

δ – Bending Vibration

ν – Stretching Vibration

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