[1] | Gill, B.S. et al., 2004. “A workshop report on wheat genome sequencing: international genome research on wheat consortium.” Genetics, 168: 1087-1096. |
|
[2] | Kihara, H., 1919. “Uber cytolosgische Studien bei einigen Getreidearten. I. Spezies- Bastarde des Weizens und Weizenmggen-Bastarde.” Botanical Magazine (Japanese), 33: 17-38. |
|
[3] | Kihara, H., 1924. “Cytologische und genetische Studien bei wichtigen Getreidearten mit besonderer Rucksicht auf das Verhalten der Chromosomen und die Sterilität in den Bastarden.” Memoirs of the College of Science, Kyoto Imperial University, 8: 1-200. |
|
[4] | Morris, R. and Sears, E.R., 1967. “The cytogenetics of wheat and its relatives. In: Wheat and Wheat Improvement (Quisenberry KS and Reitz LP, Eds.).” American Society of Agronomy, Madison WI: 19-87. |
|
[5] | Sax, K., 1922. “Sterility in wheat hybrids. II. Chromosome behavior in partially sterile hybrids” Genetics, 7(6): 49-68. |
|
[6] | Shewry, P.R., Napier, J.A. and Tatham, A.S., 1995. “Seed storage proteins: structure and biosynthesis.” Plant Cell, 7(7): 945-956. |
|
[7] | Wang, C. et al., 2012. “Human protein-disulfide isomerase is a redox-regulated chaperone activated by oxidation of domain a'.” Journal of Biological Chemistry, 287(2): 1139-1149. |
|
[8] | Cho, E.J. et al., 2011. “Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, where it interacts with maternal effect embryo arrest factor.” Molecules and Cells, 32(5): 459-475. |
|
[9] | Onda, Y. et al., 2011. “Distinct roles of protein disulfide isomerase and P5 sulfhydryl oxidoreductases in multiple pathways for oxidation of structurally diverse storage proteins in rice.” Plant Cell, 23(1): 210-223. |
|
[10] | Schwaller, M., Wilkinson, B. and Gilbert, H.F., 2003. “Reduction-reoxidation cycles contribute to catalysis of disulfide isomerisation by protein-disulfide isomerase.” Journal of Biological Chemistry, 278(9): 7154-7159. |
|
[11] | Tu, B.P. and Weissman, J.S., 2004. “Oxidative protein folding in eukaryotes:mechanisms and consequences.” Journal of Cell Biology, 64(3): 341-346. |
|
[12] | Ferrari, D.M. and Soling, H.D., 1999. “The protein disulphide-isomerase family: unravelling a string of folds.” Biochemistry Journal, 339(1): 1-10. |
|
[13] | Shorrosh, B.S. and Dixon, R.A., 1991. “Molecular cloning of a putative plant endomembrane protein resembling vertebrate protein disulfide-isomerase and a phosphatidylinositol-specific phospholinase.” Proceedings of National Academy of the Sciences, 88(23): 10941-10945. |
|
[14] | Chen, F. and Hayes, P.M., 1994. “Nucleotide sequence and developmental expression of duplicated genes encoding protein disulfide isomerase in barley (Hordeum vulgare L.).” Plant Physiology, 106(4): 1705- 1706. |
|
[15] | Li, C.P. and Larkins, B.A., 1996. “Expression of protein disulfide isomerase is elevated in the endosperm of the maize floury-2 mutant.” Plant Molecular Biology, 30(5): 873-882. |
|
[16] | Coughlan, S.J., Hastings, C. and Winfrey, R.J., 1996. “Molecular characterization of plant endoplasmic reticulum: Identification of protein disulfide-isomerase as the major reticuloplasmin.” European Journal of Biochemistry, 235(1-2): 215-224. |
|
[17] | Iwasaki, K. et al., 2009. “Molecular cloning and characterization of soybean protein disulfide isomerase family proteins with non classic active center motifs.” FEBS Journal, 276(15): 4130-4141. |
|
[18] | Kamauchi, S. et al., 2008. “Molecular cloning and characterization of two soybean protein disulfide isomerases as molecular chaperones for seed storage proteins.” FEBS Journal, 275(10): 2644-2658. |
|
[19] | Wadahama, H., Kamauchi, S., Ishimoto, M., Kawada, T. and Urade, R., 2007. “Protein disulfide isomerase family proteins involved in soybean protein biogenesis.” FEBS Journal 274(3): 687-703. |
|
[20] | Wadahama, H. et al., 2008. “A novel plant protein disulfide isomerase family homologous to animal P5: molecular cloning and characterization as a functional protein for folding of soybean seed storage proteins.” FEBS Journal, 275(3): 399-410. |
|
[21] | Ciaffi, M., Paolacci, A.R., Dominici, L., Tanzarella, O.A. and Porceddu, E., 2001. “Molecular characterization of gene sequences coding for protein disulfide isomerase (PDI) in durum wheat (Triticum turgidum ssp. durum).” Gene 265(1-2): 147-156. |
|
[22] | Shimoni, Y., Segal, G., Zhu, X. and Galili, G., 1995a. “Nucleotide sequence of a wheat cDNA encoding protein disulfide isomerase.” Plant Physiology, 107(1): 281. |
|
[23] | d'Aloisio, E. et al., 2010. “The Protein Disulfide Isomerase gene family in bread wheat (T. aestivum L.).” BMC Plant Biology, 10: 101. |
|
[24] | d’Aloisio, E. et al., 2011. “Protein disulfide isomerase family in bread wheat (Triticum aestivum L): genomic structure, synteny conservation and phylogenetic analysis.” Plant Genetic Resources, 9: 347-351. |
|
[25] | Houston, N.L. et al., 2005. “Phylogenetic Analyses Identify 10 Classes of the Protein Disulfide Isomerase Family in Plants, Including Single-Domain Protein Disulfide Isomerase-Related Proteins.” Plant Physiology, 137(2): 762-778. |
|
[26] | Ciaffi, M., Dominici, L., Tanzarella, O.A. and Porceddu, E., 1999. “Chromosomal assignment of gene sequences coding for protein disulphide isomerase (PDI) in wheat.” Theoritical and Applied Genetics, 98(3-4): 405-410. |
|
[27] | Ciaffi, M., Dominici, L., Umana, E., Tanzarella, O.A. and Porceddu, E., 2000. “Restriction fragment length polymorphism (RFLP) for protein disulfide isomerase (PDI) gene sequences in Triticum and Aegilops species.” Theoritical and Applied Genetics, 98(1-2): 405-410. |
|
[28] | Ciaffi, M., Paolacci, A.R., d'Aloisio, E., Tanzarella, O.A. and Porceddu, E., 2006. “Cloning and characterization of wheat PDI (Protein disulfide isomerase) homoeologous genes and promoter sequences.” Gene, 366(2): 209-218. |
|
[29] | Han, X. et al., 2012. “The failure to express a protein disulphide isomerase-like protein results in a floury endosperm and an endoplasmic reticulum stress response in rice.” Journal of Experimental Botany, 63(1): 121-130. |
|
[30] | Dhanapal, A.P and Porceddu, E., 2013. “Funtional and Evolutionary Genomics of Protein Disulphide Isomerase (PDI) Gene Family in Wheat and its Wild relatives: A Review.” Annual Review and Research in Biology, 3(4): 935-958. |
|
[31] | Dhanapal, A.P., 2012. “Evolutionary Relationship of Wheat Protein Disulphide Isomerase (PDI) Gene Promoter Sequence Based on Phylogenetic Analysis.” American Journal of Plant Sciences 3(3): 373-380. |
|
[32] | Dhanapal, A.P., Ciaffi, M., Porceddu, E. and d Aloisio, E., 2011. “Protein disulphide isomerase promoter sequence analysis of Triticum urartu, Aegilops speltoides and Aegilops tauschii.” Plant Genetic Resources, 9: 338-341. |
|
[33] | Higo, K., Ugawa, Y., Iwamoto, M. and Higo, H., 1999. “PLACE: a database of plant cis-acting regulatory DNA elements.” Nucleic Acids Research, 26(1): 358-359. |
|
[34] | Larkin, M.A. et al., 2007. “Clustal W and Clustal X version 2.0.” Bioinformatics, 23(21): 2947-2948. |
|
[35] | Saitou, N. and Nei, M., 1987. “The neighbor-joining method: A new method for reconstructing phylogenetic trees.” Molecular Biology and Evolution 4(4): 406-425. |
|
[36] | Tamura, K., Dudley, J., Nei, M. and Kumar, S., 2007. “MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.” Molecular Biology and Evolution 24(8): 1596-1599. |
|
[37] | Dvorak, J., Luo, M.C. and Yang, Z.L., 1998a “Genetic evidence on the origin of T. aestivum L.” In: The Origins of Agriculture and the Domestication of Crop Plants in the Near East, edited by A. DAMANIA. ICARDA, Aleppo, Syria: 235-251. |
|
[38] | Gitte, P., Seberg, O., Yde, M. and Berthelsen, K., 2006. “Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum).” Molecular Phylogenetics and Evolution, 39(1): 70-82. |
|
[39] | Kimber, G. and Feldman, M., 1987. “Wild wheat, an introduction.” Columbia (MO): College of Agriculture University of Missouri Special Report 353: 146. |
|
[40] | Simonite, T., 2006. “Ancient genetic tricks shape up wheat Turning back the evolutionary clock offers better crops for dry regions.” Nature. |
|
[41] | Albani, D. et al., 1997. "The wheat transcriptional activator SPA: a seed-specific bZIP protein that recognizes the GCN4-like motif in the bifactorial endosperm box of prolamin genes." Plant Cell 9(2): 171-184. |
|
[42] | Chandrasekharan, M.B., Bishop, K.J. and Hall, T.C., 2003. Module-specific regulation of the beta-phaseolin promoter during embryogenesis. Plant Journal, 33(5): 853-866. |
|
[43] | Wu, C., Washida, H., Onodera, Y., Harada, K. and Takaiwa, F., 2000. "Quantitative nature of the Prolamin-box, ACGT and AACA motifs in a rice glutelin gene promoter: minimal cis-element requirements for endosperm-specific gene expression." Plant Journal, 23(3): 415-421. |
|
[44] | Wu, C.Y., Suzuki, A., Washida, H. and Takaiwa, F., 1998. "The GCN4 motif in a rice glutelin gene is essential for endosperm-specific gene expression and is activated by Opaque-2 in transgenic rice plants. Plant Journal, 14(6): 673-683. |
|
[45] | d’Aloisio, E., Dhanapal, A.P., Paolacci, A.R., Tanzarella. O.A., Ciaffi, M., Porceddu, E., “The PDI (Protein Disulfide Isomerase) gene family in wheat.” Proceedings of the 11th International Wheat Genetics Symposium,24-28 August 2008b, Brisbane QLD, Australia. |
|
[46] | d’Aloisio, E., Dhanapal, A.P., Paolacci, A.R., Tanzarella. O.A., Ciaffi, M., Porceddu, E., “Protein Disulphide Isomerase Gene family in Bread Wheat – Structural Characterization and Expression analysis.” Proceedings of the International Workshop on Plant Genetic Resources For Food And Agriculture- General aspects and research opportunities, 2009b;5-6 November 2009b, Rome, Italy. |
|
[47] | d’Aloisio, E., Dhanapal, A.P., Paolacci, A.R., Tanzarella. O.A., Ciaffi, M., Porceddu, E., “Genomic Structure and Synteny Conservation Towards Rice Genome of Genes Encoding Proteins of The Protein Disulfide Isomerase Family In Wheat.” Proceedings of the 53rd Annual Congress Societa’ Italiana Di Genetica Agraria, 2009a;16-19 Septemeber, Torino. |
|
[48] | d’Aloisio, E., Dhanapal, A.P., Paolacci, A.R., Tanzarella. O.A., Porceddu, E., Ciaffi, M., “Typical PDI and its homologous in Wheat.” Proceedings of the International Durum Wheat Symposium, June 30- July 3 2008a Bologna, Italy. |
|
[49] | Dhanapal, A.P., d’Aloisio, E., Porceddu, E., Ciaffi, M., “Genetic Variability in the Promoter Regions of Protein Disulfide Isomerase In Durum Wheat and Its Wild Relatives.” Proceedings of the 53rd Annual Congress Societa’ Italiana Di Genetica Agraria, 16-19 Septemeber 2009a Torino Italy. |
|
[50] | Dhanapal, A.P., d’Aloisio, E., Ciaffi, M., Porceddu, E., “Conserved regulatory motifs identified in Protein Disulfide Isomerase Promoter sequence analysis in wheat wild relatives.” Proceedings of the International Workshop on Plant Genetic Resources For Food And Agriculture-General aspects and research opportunities. 5-6 November 2009b, Rome, Italy. |
|
[51] | Paolacci, A.R., Ciaffi, M., Dhanapal, A.P., Tanzarella. O.A., Porceddu, E., d’Aloisio, E., “Protein disulfide isomerase family in bread wheat (Triticum aestivum L): protein structure and expression analysis” Plant Genetic Resources. 2011; 9(2):342-346. |
|
[52] | Ciaffi, M., Paolacci, A.R., d’Aloisio, E, Dhanapal, A.P., Tanzarella, O.A., Porceddu, E., “Protein disulfide isomerase gene family in wheat:Genomic structure, phylogenetic and expression analyses”. Proceedings of the 54th Italian Society of Agricultural Genetics Annual Congress Matera, 27-30 September, 2010, Italy. |
|